Details for gene set NCI_PDGFR-BETA SIGNALING PATHWAY[GSEA]

Table: GSEA Results Summary

Dataset	Set_02_BT_ATM_minus_versus_ATM_plus.phenotype_BT_ATM_minus_versus_ATM_plus.cls #BT_ATM_minus_versus_ATM_plus.phenotype_BT_ATM_minus_versus_ATM_plus.cls #BT_ATM_minus_versus_ATM_plus_repos
Phenotype	phenotype_BT_ATM_minus_versus_ATM_plus.cls#BT_ATM_minus_versus_ATM_plus_repos
Upregulated in class	BT_ATM_minus
GeneSet	NCI_PDGFR-BETA SIGNALING PATHWAY
Enrichment Score (ES)	0.43386796
Normalized Enrichment Score (NES)	1.5820217
Nominal p-value	0.012562814
FDR q-value	0.53969777
FWER p-Value	0.998

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	PDGFRB	1417148_at 1436970_a_at	4	4.877	0.1391	Yes
2	LCK	1425396_a_at 1439145_at 1439146_s_at 1457917_at	50	2.528	0.2092	Yes
3	FYN	1417558_at 1441647_at 1448765_at	216	1.850	0.2546	Yes
4	VAV2	1421272_at 1435065_x_at 1435244_at 1458758_at	453	1.509	0.2869	Yes
5	HIF1A	1427418_a_at 1431981_at 1448183_a_at 1457231_at	561	1.374	0.3212	Yes
6	PIK3CA	1423144_at 1429434_at 1429435_x_at 1440054_at 1453134_at 1460326_at	854	1.165	0.3412	Yes
7	CBL	1434829_at 1446608_at 1450457_at 1455886_at	1207	1.030	0.3545	Yes
8	HCK	1446553_at 1449455_at	1585	0.951	0.3645	Yes
9	PIK3R1	1425514_at 1425515_at 1438682_at 1444591_at 1451737_at	1613	0.946	0.3902	Yes
10	ACP1	1422716_a_at 1422717_at 1450720_at 1450721_at	1690	0.927	0.4132	Yes
11	LRP1	1442849_at 1448655_at	1803	0.901	0.4339	Yes
12	PLCG1	1435149_at 1450360_at	3220	0.607	0.3865	No
13	PTPRJ	1425587_a_at 1425588_at 1427602_at 1427629_at 1443683_at 1455030_at	3464	0.567	0.3916	No
14	AKT1	1416657_at 1425711_a_at 1440950_at 1442759_at	4445	0.446	0.3595	No
15	GRB2	1418508_a_at 1449111_a_at	5050	0.386	0.3430	No
16	BCAR1	1439388_s_at 1450622_at	5606	0.335	0.3272	No
17	GRB7	1448227_at	5781	0.320	0.3284	No
18	SLC9A3R2	1428954_at 1428955_x_at 1431208_a_at 1439368_a_at 1439369_x_at 1452976_a_at	6032	0.297	0.3254	No
19	CSK	1423518_at 1439744_at	6839	0.235	0.2953	No
20	SHC1	1422853_at 1422854_at	7599	0.182	0.2659	No
21	PTPN2	1417140_a_at 1425197_at 1425198_at 1438562_a_at	8125	0.145	0.2460	No
22	HRAS	1422407_s_at 1424132_at	8526	0.118	0.2311	No
23	YES1	1418470_at 1449090_a_at 1456843_at 1458878_at	10051	0.022	0.1621	No
24	FGR	1419526_at 1442804_at	10416	-0.000	0.1455	No
25	ABL1	1423999_at 1441291_at 1444134_at 1445153_at	10942	-0.035	0.1225	No
26	SHB	1434153_at	11036	-0.041	0.1194	No
27	SLC9A3R1	1438115_a_at 1438116_x_at 1450982_at	11284	-0.056	0.1097	No
28	GRB10	1425457_a_at 1425458_a_at 1430164_a_at 1440935_at 1441620_at 1446921_at	11903	-0.093	0.0841	No
29	SRC	1423240_at 1450918_s_at	12489	-0.129	0.0611	No
30	BLK	1422775_at	12579	-0.135	0.0609	No
31	GAB1	1417693_a_at 1417694_at 1448814_at	12712	-0.143	0.0589	No
32	SOS1	1421884_at 1421885_at 1421886_at	13126	-0.170	0.0449	No
33	PTEN	1422553_at 1441593_at 1444325_at 1450655_at 1454722_at 1455728_at 1457493_at	14509	-0.263	-0.0108	No
34	RASA1	1426476_at 1426477_at 1426478_at 1438998_at	14953	-0.296	-0.0225	No
35	STAT1	1420915_at 1440481_at 1450033_a_at 1450034_at	15109	-0.307	-0.0208	No
36	SPHK1	1451596_a_at	16611	-0.430	-0.0772	No
37	STAT5A	1421469_a_at 1450259_a_at	16987	-0.467	-0.0809	No
38	SNX15	1424337_at 1456649_at 1458021_at	17194	-0.488	-0.0764	No
39	PDGFB	1450413_at 1450414_at	17393	-0.511	-0.0709	No
40	NCK2	1416796_at 1416797_at 1458432_at	17570	-0.528	-0.0638	No
41	DOK1	1417790_at	17688	-0.543	-0.0536	No
42	PTPN11	1421196_at 1427699_a_at 1451225_at	18189	-0.608	-0.0591	No
43	RAC1	1423734_at 1437674_at 1451086_s_at	18330	-0.627	-0.0476	No
44	PTPN1	1417068_a_at 1438670_at	18535	-0.658	-0.0381	No
45	NCK1	1421487_a_at 1424543_at 1447271_at	18677	-0.679	-0.0252	No
46	DNM2	1423629_at 1425135_a_at 1425136_x_at 1432004_a_at 1432005_at 1437938_x_at 1443150_at 1451057_x_at	20174	-0.974	-0.0657	No
47	STAT3	1424272_at 1426587_a_at 1459961_a_at 1460700_at	20902	-1.208	-0.0644	No
48	STAT5B	1422102_a_at 1422103_a_at	20958	-1.236	-0.0316	No
49	MYC	1424942_a_at	21058	-1.289	0.0007	No
50	PRKCD	1422847_a_at 1442256_at	21204	-1.377	0.0334	No